Title
The genus Allochromatium (Chromatiales Chromatiaceae) revisited: A study on its intragenic structure based on multilocus sequence analysis (MLSA) and DNA-DNA hybridization (DDH)
Date Issued
01 December 2011
Access level
metadata only access
Resource Type
journal article
Author(s)
Universität Bremen
Abstract
In this study, the taxonomic status of anoxygenic photosynthetic bacteria belonging to the genus Allochromatium is revisited. The inter- and intraspecies relationship of seven Allochromatium strains, including a set of well described type strains, were examined by DNA-DNA hybridization (DDH) and multilocus sequence analysis (MLSA) using segments of seven protein-coding genes. The re-sequencing of the 16S rRNA, the internal transcriber spacer (ITS), multi-gene analysis and DDH comparison indicated that both type strains Allochromatium vinosum DSM 180 T and Allochromatium minutissimum DSM 1376 T are closely related to each other forming an independent cluster together with the strains A. vinosum DSM 183 and DSM 1686. The internal comparison of members of this A. vinosum phylogroup showed values of DDH relatedness above 80% and concatenated sequence similarities (4744bp) above 98%. In contrast, the MLSA scheme has identified A. vinosum strain BH-2 as a separate lineage. Strain BH-2 was first classified as a member of the species A. vinosum based on DDH comparison. However, this strain showed the lowest similarity values of the 16S rRNA gene and concatenated sequences, as well as amino acid identity (AAI) when compared to other Allochromatium strains, suggesting that strain BH-2 may represent a new species. © 2011 Elsevier GmbH.
Start page
590
End page
594
Volume
34
Issue
8
Language
English
OCDE Knowledge area
Biología celular, Microbiología
Subjects
Scopus EID
2-s2.0-83155180489
PubMed ID
Source
Systematic and Applied Microbiology
ISSN of the container
07232020
Sponsor(s)
Support of the Bremen University and the Max Planck Society is gratefully acknowledged. WS was a member of the International Max Planck Research School of Marine Microbiology (MarMic). RRM acknowledges the support of project CLG2009_12651-C02-02 of the Spanish Ministry of Science and Innovation , also co-financed with FEDER support from the European Union .
Sources of information:
Directorio de Producción Científica
Scopus