Title
Evaluation of the use of multilocus sequence analysis (MLSA) to resolve taxonomic conflicts within the genus Marichromatium
Date Issued
01 April 2010
Access level
metadata only access
Resource Type
journal article
Author(s)
Amann R.
Rosselló-Mora R.
Fischer U.
Universität Bremen
Abstract
Four species of marine purple sulfur bacteria of the genus Marichromatium have been validly described. A recent re-analysis of the 16S rRNA-based similarity and genomic DNA-DNA hybridizations (DDH) of the type strains [33] suggested that some of them are so closely related that they can be considered heterotypic synonyms. Here, we report on the evaluation of the multilocus sequence analysis approach (MLSA) for nine Marichromatium strains in order to resolve their intrageneric genealogical relationships. MLSA was based on six protein-coding genes (gyrB, recA, fusA, dnaK, pufM, and soxB), and the results were comparable to DDH. The phylogenetic tree constructed with the concatenated sequences, which also included the 16S rRNA gene and the internal transcriber spacer ITS region (4331. bp), separated the nine strains in four lineages that reflected the four Marichromatium species. The reconstructed phylogenetic tree based on concatenation of six protein-coding genes was also highly congruent with the tree topology based on the 16S rRNA gene. © 2010 Elsevier GmbH.
Start page
116
End page
121
Volume
33
Issue
3
Language
English
OCDE Knowledge area
Biología marina, Biología de agua dulce, Limnología
Scopus EID
2-s2.0-77950955251
PubMed ID
Source
Systematic and Applied Microbiology
ISSN of the container
07232020
Sponsor(s)
We are grateful to Dr. Ch. Sasikala from the Jawaharlal Nehru Technological University, India for providing the original type strains of M. indicum JA100 T and M. bheemlicum JA124 T , Ms. Clelia Dona from the Department of Marine Microbiology of the University of Bremen for providing the M. gracile strain CLA37, and Daniel Santillano for proof reading the manuscript. Financial support from the University of Bremen and the Max Planck Society is gratefully acknowledged. RRM acknowledges the Ministerio de Ciencias e Innovación for research support in the projects CE-CSD2007-0005 and CLG2006-12714-C02-02. WS was a Ph.D. student of the International Max Planck Research School of Marine Microbiology (MarMic).
Sources of information: Directorio de Producción Científica Scopus