Title
Biclustering of expression data with evolutionary computation
Date Issued
01 May 2006
Access level
metadata only access
Resource Type
journal article
Author(s)
Divina F.
Pablo de Olavide University
Abstract
Microarray techniques are leading to the development of sophisticated algorithms capable of extracting novel and useful knowledge from a biomedical point of view. In this work, we address the biclustering of gene expression data with evolutionary computation. Our approach is based on evolutionary algorithms, which have been proven to have excellent performance on complex problems, and searches for biclusters following a sequential covering strategy. The goal is to find biclusters of maximum size with mean squared residue lower than a given δ. In addition, we pay special attention to the fact of looking for high-quality biclusters with large variation, i.e., with a relatively high row variance, and with a low level of overlapping among biclusters. The quality of biclusters found by our evolutionary approach is discussed and the results are compared to those reported by Cheng and Church, and Yang et al. In general, our approach, named SEBI, shows an excellent performance at finding patterns in gene expression data. © 2006 IEEE.
Start page
590
End page
602
Volume
18
Issue
5
Language
English
OCDE Knowledge area
Ingeniería de sistemas y comunicaciones
Informática y Ciencias de la Información
Subjects
Scopus EID
2-s2.0-33645659540
Source
IEEE Transactions on Knowledge and Data Engineering
ISSN of the container
10414347
DOI of the container
10.1109/TKDE.2006.74
Source funding
Spanish Research Agency CICYT
Junta de Andalucía
Sponsor(s)
The authors would like to thank the reviewers for their valuable suggestions. The research was supported by the Spanish Research Agency CICYT under grant TIN2004-00159 and Junta de Andalucia (III Research Program).
Sources of information:
Directorio de Producción Científica
Scopus