Title
Sensitive SYBR green-real time PCR for the detection and quantitation of avian rotavirus A
Date Issued
01 January 2019
Access level
open access
Resource Type
journal article
Author(s)
De la Torre D.
Astolfi-Ferreira C.S.
Ferreira A.J.P.
Publisher(s)
MDPI
Abstract
Avian rotavirus A (ARtV-A) is a virus that affects young birds, causing acute diarrhea and economic losses in the poultry industry worldwide. The techniques used for the diagnosis of ARtV-A include electron microscopy, isolation in cell culture, and serology, as well as molecular techniques, such as the reverse transcription-polymerase chain reaction (RT-PCR). The objective of this work was to standardize a real-time RT-polymerase chain reaction (RT-qPCR) using SYBR Green chemistry for the rapid detection and quantification of ARtV-A from bird tissues and materials fixed on FTA cards on the basis of the nucleotide sequence of segment 6 (S6), which codes for the structural VP6 protein of ARtV-A. The results show the efficient amplification of the proposed target, with a limit of detection (LoD) of one copy gene (CG) per microliter of cDNA and a limit of quantification (LoQ) of 10 CGs per microliter. The efficiency of the primers was determined to be 95.66% using a standard curve, with an R2 value of 0.999 and a slope of -3.43. The specificity was determined using samples coinfected with ARtV-A, the chicken parvovirus, the chicken astrovirus, and the avian nephritis virus as positive controls and commercially available vaccines of the infectious bronchitis virus, infectious bursa disease virus, avian reovirus and healthy organs as negative controls. This technique, which lacks nonspecific PCR products and dimers, demonstrated greater sensitivity and specificity than conventional RT-PCR, and it reduced the analysis time by more than 50%.
Volume
6
Issue
1
Language
English
OCDE Knowledge area
Ciencia veterinaria Virología
Scopus EID
2-s2.0-85069757927
Source
Veterinary Sciences
ISSN of the container
23067381
Sponsor(s)
This work was supported financially by grants from the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP-Grant #2013/08560-5 and 2015/09348-5), and by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Brasília-DF, Brazil (CAPES-Grant 1706271). The authors would like to thank the poultry companies in Brazil that generously sent samples for the development of this study. The first author thanks the "Secretaría de Educación Superior, Ciencia, Tecnología e Innovación-SENESCYT" for economic support through the Universities of Excellence 2014 scholarship program in Ecuador. Acknowledgments: The authors would like to thank the poultry companies in Brazil that generously sent samples for the development of this study. The first author thanks the “Secretaría de Educación Superior, Ciencia, Tecnología e Innovación—SENESCYT” for economic support through the Universities of Excellence 2014 scholarship program in Ecuador.
Sources of information: Directorio de Producción Científica Scopus