Title
Unusual mechanical stability of a minimal RNA kissing complex
Date Issued
24 October 2006
Access level
open access
Resource Type
journal article
Author(s)
University of California
Abstract
By using optical tweezers, we have investigated the mechanical unfolding of a minimal kissing complex with only two G-C base pairs. The loop-loop interaction is exceptionally stable; it is disrupted at forces ranging from 7 to 30 pN, as compared with 14-20 pN for unfolding hairpins of 7 and 11 bp. By monitoring unfolding/folding trajectories of single molecules, we resolved the intermediates, measured their rate constants, and pinpointed the rate-limiting steps. The two hairpins unfold only after breaking the intramolecular kissing interaction, and the kissing interaction forms only after the folding of the hairpins. At forces that favor the unfolding of the hairpins, the entire RNA structure is kinetically stabilized by the kissing interaction, and extra work is required to unfold the metastable hairpins. The strong mechanical stability of even a minimal kissing complex indicates the importance of such loop-loop interactions in initiating and stabilizing RNA dimers in retroviruses. © 2006 by The National Academy of Sciences of the USA.
Start page
15847
End page
15852
Volume
103
Issue
43
Language
English
OCDE Knowledge area
Biología Bioquímica, Biología molecular
Scopus EID
2-s2.0-33750447980
PubMed ID
Source
Proceedings of the National Academy of Sciences of the United States of America
ISSN of the container
00278424
Sponsor(s)
National Institute of General Medical Sciences, R37GM010840, NIGMS
Sources of information: Directorio de Producción Científica Scopus