Title
FIND tuberculosis strain bank: A resource for researchers and developers working on tests to detect mycobacterium tuberculosis and related drug resistance
Date Issued
01 April 2017
Access level
open access
Resource Type
journal article
Author(s)
Tessema B.
Nabeta P.
Valli E.
Albertini A.
Lan N.H.
Romancenco E.
Tukavdze N.
Denkinger C.M.
Dolinger D.L.
Publisher(s)
American Society for Microbiology
Abstract
The spread of multidrug-resistant (MDR) tuberculosis (TB) and extensively drug-resistant (XDR) TB hampers global efforts in the fight against tuberculosis. To enhance the development and evaluation of diagnostic tests quickly and efficiently, well-characterized strains and samples from drug-resistant tuberculosis patients are necessary. In this project, the Foundation for Innovative New Diagnostics (FIND) has focused on the collection, characterization, and storage of such wellcharacterized reference materials and making them available to researchers and developers. The collection is being conducted at multiple centers in Southeast Asia, South America, Eastern Europe, and soon the sub-Saharan Africa regions. Strains are characterized for their phenotypic resistances and MICs to first-line drugs (FLDs) and second-line drugs (SLDs) using the automated MGIT 960 system following validated procedures and WHO criteria. Analysis of resistance-associated mutations is done by whole-genome sequencing (WGS) using the Illumina NextSeq system. Mycobacterial interspersed repetitive-unit∗variable-number tandem-repeat analysis and WGS are used to determine strain lineages. All strains are maintained frozen at β80°C - 10°C as distinct mother and daughter lots. All strains are extensively quality assured. The data presented here represent an analysis of the initial part of the collection. Currently, the bank contains 118 unique strains with extracted genomic DNA and matched sputum, serum, and plasma samples and will be expanded to a minimum of 1,000 unique strains over the next 3 years. Analysis of the current strains by phenotypic resistance testing shows 102 (86.4%), 10 (8.5%), and 6 (5.1%) MDR, XDR, and mono/poly resistant strains, respectively. Two of the strains are resistant to all 11 drugs that were phenotypically tested. WGS mutation analysis revealed FLD resistance-associated mutations in the rpoB, katG, inhA, embB, embA, and pncA genes; SLD resistance in the gyrA, gyrB, rrs, eis, and tlyA genes; and ethionamide resistance in the ethA genes. Most important lineages are represented in the bank, and further collections have been initiated to increase geographic and lineage diversity. The bank provides highly characterized and high-quality strains as a resource for researchers and developers in support of the development and evaluation of new diagnostics and drug resistance detection tools.
Start page
1066
End page
1073
Volume
55
Issue
4
Language
English
OCDE Knowledge area
Enfermedades infecciosas Biología celular, Microbiología
Scopus EID
2-s2.0-85016179903
PubMed ID
Source
Journal of Clinical Microbiology
ISSN of the container
00951137
Sources of information: Directorio de Producción Científica Scopus