Title
Theory for the hydrodynamic and electrophoretic stretch of tethered B- DNA
Date Issued
01 January 1998
Access level
open access
Resource Type
journal article
Author(s)
University of Oregon
Publisher(s)
Biophysical Society
Abstract
We have developed a theory for the extension and force of B-DNA tethered at a fixed point in a uniform hydrodynamic flow or in a uniform applied electric field. The chain tethered in an electric field is considered to be subject to free electrophoresis compensated by free sedimentation in the opposite direction. This allows the use of results of free electrophoresis for including the effects of small ions. The force on the chain is derived for a sequence of ellipsoidal segments, each twice the persistence length of the wormlike chain. Hydrodynamic interaction between these segments is based on the long-range limit of flow around the prolate ellipsoids, as derived from equivalent Stokes spheres. The chain extension is derived by applying the entropic elasticity relation of Marko and Siggia (1995 Macromolecules. 28:8759-8770) to each segment for polymer chains under constant tension. We justify this procedure by comparing with extension results based on the Boltzmann averaged orientation of straight, freely jointed segments. Predicted results agree well with recent extension-flow experiments by Perkins et al., 1995. Science. 258:83-87, and with electrophoretic stretch experiments by Smith and Bendich (1990 Biopolymers. 29:1167-1173) on fluorescently stained B-DNA. We find that the equivalence of hydrodynamic and electrophoretic stretch, proposed by Long et al. (1996 Phys. Rev. Lett. 76:3858-3861; 1996 Biopolymers 39:755-759), is valid only for very small chain deformations, but not in general.
Start page
1197
End page
1210
Volume
75
Issue
3
Language
English
OCDE Knowledge area
Ciencia de los polímeros Bioquímica, Biología molecular
Scopus EID
2-s2.0-0031655429
PubMed ID
Source
Biophysical Journal
ISSN of the container
00063495
Sponsor(s)
This work was supported by National Science Foundation Grants MBC 9118482 and BIR 9318945, and National Institutes of Health Grant GM-32543.
Sources of information: Directorio de Producción Científica Scopus