Title
Assignment of structural transitions during mechanical unwrapping of nucleosomes and their disassembly products
Date Issued
16 August 2022
Access level
open access
Resource Type
journal article
Author(s)
Dıaz-Celis C.
Cañari-Chumpitaz C.
Sosa R.P.
Castillo J.P.
Zhang M.
Cheng E.
Chen A.Q.
Vien M.
Kim J.H.
Onoa B.
University of California
Publisher(s)
National Academy of Sciences
Abstract
Nucleosome DNA unwrapping and its disassembly into hexasomes and tetrasomes is necessary for genomic access and plays an important role in transcription regulation. Previous single-molecule mechanical nucleosome unwrapping revealed a low- and a high-force transitions, and force-FRET pulling experiments showed that DNA unwrapping is asymmetric, occurring always first from one side before the other. However, the assignment of DNA segments involved in these transitions remains controversial. Here, using high-resolution optical tweezers with simultaneous single-molecule FRET detection, we show that the low-force transition corresponds to the undoing of the outer wrap of one side of the nucleosome (∼27 bp), a process that can occur either cooperatively or noncooperatively, whereas the high-force transition corresponds to the simultaneous unwrapping of ∼76 bp from both sides. This process may give rise stochastically to the disassembly of nucleosomes into hexasomes and tetrasomes whose unwrapping/ rewrapping trajectories we establish. In contrast, nucleosome rewrapping does not exhibit asymmetry. To rationalize all previous nucleosome unwrapping experiments, it is necessary to invoke that mechanical unwrapping involves two nucleosome reorientations: one that contributes to the change in extension at the low-force transition and another that coincides but does not contribute to the high-force transition.
Volume
119
Issue
33
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular
Fisiología
Subjects
Scopus EID
2-s2.0-85135550323
PubMed ID
Source
Proceedings of the National Academy of Sciences of the United States of America
ISSN of the container
0027-8424
DOI of the container
10.1073/pnas.2206513119
Sponsor(s)
ACKNOWLEDGMENTS. We thank Professor Geeta Narlikar for providing the expression vectors of X. laevis histones. We thank Dr. Simon P€opsel and Professor Eva Nogales for their help with preparative electrophoresis purification. This research was supported by the Nanomachine program (KC1203) funded by the Office of Basic Energy Sciences of the U.S. Department of Energy (contract DE-AC02-05CH11231 to C.B.) and by the NIH (grant R01GM032543). C.B. is a Howard Hughes Medical Institute Investigator.
Sources of information:
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