Title
Non-equilibrium dynamics of a nascent polypeptide during translation suppress its misfolding
Date Issued
01 December 2019
Access level
open access
Resource Type
journal article
Author(s)
Alexander L.M.
Goldman D.H.
Wee L.M.
University of California
Publisher(s)
Nature Publishing Group
Abstract
Protein folding can begin co-translationally. Due to the difference in timescale between folding and synthesis, co-translational folding is thought to occur at equilibrium for fast-folding domains. In this scenario, the folding kinetics of stalled ribosome-bound nascent chains should match the folding of nascent chains in real time. To test if this assumption is true, we compare the folding of a ribosome-bound, multi-domain calcium-binding protein stalled at different points in translation with the nascent chain as is it being synthesized in real-time, via optical tweezers. On stalled ribosomes, a misfolded state forms rapidly (1.5 s). However, during translation, this state is only attained after a long delay (63 s), indicating that, unexpectedly, the growing polypeptide is not equilibrated with its ensemble of accessible conformations. Slow equilibration on the ribosome can delay premature folding until adequate sequence is available and/or allow time for chaperone binding, thus promoting productive folding.
Volume
10
Issue
1
Language
English
OCDE Knowledge area
Química física
Scopus EID
2-s2.0-85067605765
PubMed ID
Source
Nature Communications
ISSN of the container
20411723
Sponsor(s)
We thank Professor Ignacio Tinoco Jr., who sadly passed away before this work was completed, for his scientific guidance. We also thank Shannon Yan and Varsha Desai for helpful discussions. We thank Professor Carol Deutsch for editing the manuscript. We thank Apurva Shah and Abigail Keller for assistance in preliminary experiments. This work was supported by the Howard Hughes Medical Institute, by the National Institutes of Health grants R01GM071552 and R01GM032543, and the Nanomachines program (KC1203) funded by the Office of Basic Energy Sciences of the U.S. Department of Energy (DOE) contract no. DE-AC02-05CH11231. L.M.A. was supported by the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. L.M.W. is a Fellow of The Jane Coffin Childs Memorial Fund for Medical Research and has been aided by a grant from The Jane Coffin Childs Memorial Fund for Medical Research.
Sources of information: Directorio de Producción Científica Scopus