cris.boxmetadata.label.title
Cotemporal Single-Molecule Force and Fluorescence Measurements to Determine the Mechanism of Ribosome Translocation
cris.boxmetadata.label.dateissued
01 browse.startsWith.months.january 2022
cris.boxmetadata.label.accesslevel
metadata only access
cris.boxmetadata.label.resourcetype
book part
cris.boxmetadata.label.authors
Berkeley
cris.boxmetadata.label.publisher
Humana Press Inc.
cris.boxmetadata.label.abstract
Ribosomes are at the core of the central dogma of life. They perform the last major step of gene expression by translating the information written in the nucleotide codon sequences into the amino acid sequence of a protein. This is a complex mechanochemical process that requires the coordination of multiple dynamic events within the ribosome such as the precise timing of decoding and the subsequent translocation along the mRNA. We have previously used a high-resolution optical tweezers instrument with single-molecule fluorescence capabilities (“fleezers”) to study how ribosomes couple binding of the GTPase translation elongation factor EF-G with internal conformational changes to unwind and progress across the mechanical barriers posed by mRNA secondary structures. Here, we present a detailed description of the procedures for monitoring two orthogonal channels (EF-G binding and translocation) by single actively translating ribosomes in real-time, to uncover the mechanism by which they harness chemical energy to generate mechanical force and displacement.
cris.boxmetadata.label.citationstartpage
381
cris.boxmetadata.label.citationendpage
399
cris.boxmetadata.label.volume
2478
cris.boxmetadata.label.language
English
cris.boxmetadata.label.ocdeknowledgeArea
Bioquímica, Biología molecular
Biofísica
cris.boxmetadata.label.subjects
cris.boxmetadata.label.doi
cris.boxmetadata.label.scopusidentifier
2-s2.0-85137154066
cris.boxmetadata.label.pubmedidentifier
cris.boxmetadata.label.source
Methods in Molecular Biology
cris.boxmetadata.label.containerissn
1064-3745
cris.boxmetadata.label.containerdoi
10.1007/978-1-0716-2229-2_14
cris.boxmetadata.label.sponsor
We thank Charles Wickersham and Matthew Comstock for his help in building the high-resolution optical tweezers instrument with single-molecule detection. We thank Mauricio Righini, Antony Lee, Laura Lancaster, and Harry Noller for their contributions to developing the single-molecule translation assay including instrumentation and data analysis. C.J.B. is a Howard Hughes Medical Institute investigator. This research was supported by the Howard Hughes Medical Institute (instrumentation and ribosome biochemistry); by NIH grants R01GM071552 and R01GM032543 (fluorescence experiments); and the Nanomachine program (KC1203), funded by the Office of Basic Energy Sciences of the U.S. Department of Energy (DOE) contract no. DE-AC02-05CH11231 (data analysis algorithms).
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