Title
Cotemporal Single-Molecule Force and Fluorescence Measurements to Determine the Mechanism of Ribosome Translocation
Date Issued
01 January 2022
Access level
metadata only access
Resource Type
book part
Author(s)
Berkeley
Publisher(s)
Humana Press Inc.
Abstract
Ribosomes are at the core of the central dogma of life. They perform the last major step of gene expression by translating the information written in the nucleotide codon sequences into the amino acid sequence of a protein. This is a complex mechanochemical process that requires the coordination of multiple dynamic events within the ribosome such as the precise timing of decoding and the subsequent translocation along the mRNA. We have previously used a high-resolution optical tweezers instrument with single-molecule fluorescence capabilities (“fleezers”) to study how ribosomes couple binding of the GTPase translation elongation factor EF-G with internal conformational changes to unwind and progress across the mechanical barriers posed by mRNA secondary structures. Here, we present a detailed description of the procedures for monitoring two orthogonal channels (EF-G binding and translocation) by single actively translating ribosomes in real-time, to uncover the mechanism by which they harness chemical energy to generate mechanical force and displacement.
Start page
381
End page
399
Volume
2478
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular Biofísica
Scopus EID
2-s2.0-85137154066
PubMed ID
Source
Methods in Molecular Biology
ISSN of the container
1064-3745
DOI of the container
10.1007/978-1-0716-2229-2_14
Sponsor(s)
We thank Charles Wickersham and Matthew Comstock for his help in building the high-resolution optical tweezers instrument with single-molecule detection. We thank Mauricio Righini, Antony Lee, Laura Lancaster, and Harry Noller for their contributions to developing the single-molecule translation assay including instrumentation and data analysis. C.J.B. is a Howard Hughes Medical Institute investigator. This research was supported by the Howard Hughes Medical Institute (instrumentation and ribosome biochemistry); by NIH grants R01GM071552 and R01GM032543 (fluorescence experiments); and the Nanomachine program (KC1203), funded by the Office of Basic Energy Sciences of the U.S. Department of Energy (DOE) contract no. DE-AC02-05CH11231 (data analysis algorithms).
Sources of information: Directorio de Producción Científica Scopus