Considerable advancement in spatiotemporal resolution of remote sensing and ground-based measurements has enabled refinement of parameters used in land surface models for simulating surface water fluxes. However, land surface modeling capabilities are still inadequate for accurate representation of subsurface properties and processes, which continue to limit the accuracy of land surface model simulation. Our objective in this study was to examine the performance of the variously parameterized Noah land surface model with multiphysics option (Noah-MP) in simulating evapotranspiration (ET) and soil moisture dynamics in stony soils using verification from eddy covariance ET and in situ soil moisture data during the growing season of year 2015, obtained from the Lower Sheep subcatchment within the Reynolds Creek Experimental Watershed in southwestern Idaho. We evaluated the performance of Noah-MP considering four different scenarios with 1) a one-layer soil profile with Noah-MP default soil hydraulic parameters and three more five-layer soil profiles using 2) Noah-MP default soil hydraulic parameters; 3) soil hydraulic parameters derived from a pedotransfer function using field observations; and 4) hydraulic parameters from scenario 3, which also accounted for stone content in each layer. Each modeling experiment was forced with the same set of initial conditions, atmospheric input, and vegetation parameters. Our results indicate that enhanced representation of soil profile properties and stone content information noticeably improve the Noah-MP land surface model simulation of soil moisture content and evapotranspiration.