Title
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC
Date Issued
17 November 2006
Access level
open access
Resource Type
journal article
Author(s)
Zhang Y.
Smith C.L.
Saha A.
Grill S.W.
Mihardja S.
Smith S.B.
Cairns B.R.
Peterson C.L.
Universidad de California
Publisher(s)
Cell Press
Abstract
ATP-dependent chromatin-remodeling complexes (remodelers) modulate gene transcription by regulating the accessibility of highly packaged genomic DNA. However, the molecular mechanisms involved at the nucleosomal level in this process remain controversial. Here, we monitor the real-time activity of single ySWI/SNF or RSC complexes on single, stretched nucleosomal templates under tensions above 1 pN forces. We find that these remodelers can translocate along DNA at rates of ∼13 bp/s and generate forces up to ∼12 pN, producing DNA loops of a broad range of sizes (20-1200 bp, average ∼100 bp) in a nucleosome-dependent manner. This nucleosome-specific activity differs significantly from that on bare DNA observed under low tensions and suggests a nucleosome-remodeling mechanism through intranucleosomal DNA loop formation. Such loop formation may provide a molecular basis for the biological functions of remodelers. ©2006 Elsevier Inc.
Start page
559
End page
568
Volume
24
Issue
4
Language
English
OCDE Knowledge area
Biología celular, Microbiología Bioquímica, Biología molecular
Scopus EID
2-s2.0-33947638345
PubMed ID
Source
Molecular Cell
ISSN of the container
10972765
Sponsor(s)
We thank J. Widom for providing histone octamer for initial experiments and plasmid containing the 601 sequence; G. Bowman, J. Core, and J. Quinlan for critical reading of the manuscript; and J. Wang and E. Watson for technical assistance. This research was supported by the Jane Coffin Childs Memorial Fund (Y.Z.), NIH grants (GM32543 to C.B., GM49650 to C.L.P., and GM60415 to B.R.C.), and DOE grants to C.B.
Sources of information: Directorio de Producción Científica Scopus