Title
Ribosomal Interaction of Bacillus stearothermophilus Translation Initiation Factor IF2: Characterization of the Active Sites
Date Issued
12 February 2010
Access level
metadata only access
Resource Type
journal article
Author(s)
Caserta E.
Ferrara C.
Fabbretti A.
Rocchetti A.
Tomšic J.
Pon C.L.
Gualerzi C.O.
La Teana A.
University of Camerino
Publisher(s)
Academic Press
Abstract
InfB-encoded translation initiation factor IF2 contains a non-conserved N-terminal domain and two conserved domains (G and C) constituted by three (G1, G2 and G3) and two (C1 and C2) sub-domains. Here, we show that: (i) Bacillus stearothermophilus IF2 complements in vivo an Escherichia coli infB null mutation and (ii) the N-domain of B. stearothermophilus IF2, like that of E. coli IF2, provides a strong yet dispensable interaction with 30 S and 50 S subunits in spite of the lack of any size, sequence or structural homology between the N-domains of the two factors. Furthermore, the nature of the B. stearothermophilus IF2 sites involved in establishing the functional interactions with the ribosome was investigated by generating deletion, random and site-directed mutations within sub-domains G2 or G3 of a molecule carrying an H301Y substitution in switch II of the G2 module, which impairs the ribosome-dependent GTPase activity of IF2. By selecting suppressors of the dominant-lethal phenotype caused by the H301Y substitution, three independent mutants impaired in ribosome binding were identified; namely, S387P (in G2) and G420E and E424K (in G3). The functional properties of these mutants and those of the deletion mutants are compatible with the premise that IF2 interacts with 30 S and 50 S subunits via G3 and G2 modules, respectively. However, beyond this generalization, because the mutation in G2 resulted in a functional alteration of G3 and vice versa, our results indicate the existence of extensive "cross-talking" between these two modules, highlighting a harmonic conformational cooperation between G2 and G3 required for a functional interaction between IF2 and the two ribosomal subunits. It is noteworthy that the E424K mutant, which completely lacks GTPase activity, displays IF2 wild-type capacity in supporting initiation of dipeptide formation. © 2009.
Start page
118
End page
129
Volume
396
Issue
1
Language
English
OCDE Knowledge area
Biología celular, Microbiología
Subjects
Scopus EID
2-s2.0-74649084177
PubMed ID
Source
Journal of Molecular Biology
ISSN of the container
00222836
Sponsor(s)
This work was supported, in part, by research grants from the Italian MIUR (PRIN 2005 to A.L.T. and PRIN 2007 to C.O.G. and C.L.P.). We are grateful to Dr E. Schmitt and Dr Y. Mechulam (Laboratoire de Biochimie, Ecole Polytechnique, Palaiseau Cedex, France) for the gift of the pMAK705 plasmid.
Sources of information:
Directorio de Producción Científica
Scopus