We report the emergence of zero-energy states in the trivial phase of a short nanowire junction with a strong spin-orbit coupling and magnetic field, formed by strong coupling between the nanowire and two superconductors. The zero-energy states appear in the junction when the superconductors induce a large energy shift in the nanowire, such that the junction naturally forms a quantum dot, a process that is highly tunable by the superconductor width. Most importantly, we demonstrate that the zero-energy states produce a π shift in the phase-biased supercurrent, which can be used as a simple tool for their unambiguous detection, ruling out any Majorana-like interpretation.