Title
Intercalation of cationic dyes in the DNA double helix: Introductory theory
Date Issued
01 January 1984
Access level
metadata only access
Resource Type
journal article
Author(s)
Stigter D.
University of California
Abstract
The effect of salt on the intercalation of acridine dyes and DNA is rather well explained by the Gouy‐Chapman double‐layer theory as applied to a cylinder model of the DNA–dye complex. The free energy of transfer of a dye ion from the bulk solution to the complex is divided into several parts, one of which, ΔF0, accounts for the short‐range, nonelectrostatic interactions. The assumption that ΔF0 should not depend on the amount of dye in the complex leads to an internal dielectric constant of the cylinder of about Di = 7. The scatter in ΔF0 values, as calculated from individual experimental points, is of order 0.5 kT per dye ion. This scatter is large enough to mask possible effects of heterogeneity in DNA sequences. The calculations are made for a long cylinder with radius 10 Å, with the DNA phosphate charges smeared uniformly at the surface, a uniform spacing of dye charges at the cylinder axis, and a length of b = 3.37 Å per base pair. Each intercalated dye ion also adds a length b to the total length of the cylinder. The salt‐dependent part of the electric free energy of intercalation, ΔF1, is tabulated for complexes with r = 0–0.24 dye ions per DNA phosphate in 0.002–0.2M monovalent salt and dye solutions. Copyright © 1984 John Wiley & Sons, Inc.
Start page
629
End page
645
Volume
23
Issue
4
Language
English
OCDE Knowledge area
Genética, Herencia
Ciencia de los polímeros
Scopus EID
2-s2.0-0021414182
PubMed ID
Source
Biopolymers
ISSN of the container
00063525
Sponsor(s)
National Institute of General Medical Sciences - R37GM010840.
Sources of information:
Directorio de Producción Científica
Scopus