Title
NMR Methods for Structural Characterization of Protein-Protein Complexes
Date Issued
28 January 2020
Access level
open access
Resource Type
journal article
Author(s)
Universidad de Puerto Rico
Publisher(s)
Frontiers Media S.A.
Abstract
Protein-protein interactions and the complexes thus formed are critical elements in a wide variety of cellular events that require an atomic-level description to understand them in detail. Such complexes typically constitute challenging systems to characterize and drive the development of innovative biophysical methods. NMR spectroscopy techniques can be applied to extract atomic resolution information on the binding interfaces, intermolecular affinity, and binding-induced conformational changes in protein-protein complexes formed in solution, in the cell membrane, and in large macromolecular assemblies. Here we discuss experimental techniques for the characterization of protein-protein complexes in both solution NMR and solid-state NMR spectroscopy. The approaches include solvent paramagnetic relaxation enhancement and chemical shift perturbations (CSPs) for the identification of binding interfaces, and the application of intermolecular nuclear Overhauser effect spectroscopy and residual dipolar couplings to obtain structural constraints of protein-protein complexes in solution. Complementary methods in solid-state NMR are described, with emphasis on the versatility provided by heteronuclear dipolar recoupling to extract intermolecular constraints in differentially labeled protein complexes. The methods described are of particular relevance to the analysis of membrane proteins, such as those involved in signal transduction pathways, since they can potentially be characterized by both solution and solid-state NMR techniques, and thus outline key developments in this frontier of structural biology.
Volume
7
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular
Subjects
Scopus EID
2-s2.0-85079491740
Source
Frontiers in Molecular Biosciences
ISSN of the container
2296889X
Sponsor(s)
This work was supported by funds from NIGMS R35GM133488 (to VV), the Roy J. Carver Charitable Trust (to VV), the Puerto.
We thank Drs. G. Marius Clore and Jeong-Yong Suh for providing the RDC data for the EIN-HPr complex. Funding. This work was supported by funds from NIGMS R35GM133488 (to VV), the Roy J. Carver Charitable Trust (to VV), the Puerto Rico Science, Technology and Research Trust award 2020-00128 (to MB), the Institutional Funds for Research (FIPI) Program, and the UPR-RP Graduate Studies and Research Deanship (to MB).
Sources of information:
Directorio de Producción Científica
Scopus