Title
Opposition-based memetic algorithm and hybrid approach for sorting permutations by reversals
Date Issued
01 January 2017
Access level
metadata only access
Resource Type
journal article
Author(s)
Muñoz D.M.
Ayala-Rincón M.
University of Brasília
Publisher(s)
MIT Press Journals
Abstract
Sorting unsigned permutations by reversals is a difficult problem; indeed, it was proved to be NP-hard by Caprara (1997). Because of its high complexity, many approximation algorithms to compute the minimal reversal distance were proposed until reaching the nowadays best-known theoretical ratio of 1.375. In this article, two memetic algorithms to compute the reversal distance are proposed. The first one uses the technique of opposition-based learning leading to an opposition-based memetic algorithm; the second one improves the previous algorithm by applying the heuristic of two breakpoint elimination leading to a hybrid approach. Several experiments were performed with one-hundred randomly generated permutations, single benchmark permutations, and biological permutations. Results of the experiments showed that the proposed OBMA and Hybrid-OBMA algorithms achieve the best results for practical cases, that is, for permutations of length up to 120. Also, Hybrid-OBMA showed to improve the results of OBMA for permutations greater than or equal to 60. The applicability of our proposed algorithms was checked processing permutations based on biological data, in which case OBMA gave the best average results for all instances.
Start page
229
End page
265
Volume
27
Issue
2
Language
English
OCDE Knowledge area
Bioinformática
Scopus EID
2-s2.0-85066635013
PubMed ID
Source
Evolutionary Computation
ISSN of the container
10636560
Sponsor(s)
This research was funded by the Brazilian National Council for Scientific and Technological Development (CNPq) under the Brazilian Ministry for Scientific and Technological Development, under a Universal Grant (process number 476952/2013-1) and by the District Federal Research Support Foundation (FAPDF) under grant (process number 193.001.369/2016). During the development of this research, the first author was funded by a Ph.D. scholarship from the Brazilian Coordination for the Improvement of Higher Education Personnel (CAPES) under the Brazilian Ministry for Education, and the third author was partially funded by a CNPq high productivity research grant (process number 307009/2013-0).
Sources of information: Directorio de Producción Científica Scopus