Title
Discovering α-patterns from gene expression data
Date Issued
01 January 2007
Access level
open access
Resource Type
conference paper
Author(s)
Universidad de Sevilla
Publisher(s)
Springer Verlag
Abstract
The biclustering techniques have the purpose of finding subsets of genes that show similar activity patterns under a subset of conditions. In this paper we characterize a specific type of pattern, that we have called α-pattem, and present an approach that consists in a new biclustering algorithm specifically designed to find α-patterns, in which the gene expression values evolve across the experimental conditions showing a similar behavior inside a band that ranges from 0 up to a pre-defined threshold called α. The α value guarantees the co-expression among genes. We have tested our method on the Yeast dataset and compared the results to the biclustering algorithms of Cheng & Church (2000) and Aguilar & Divina (2005). Results show that the algorithm finds interesting biclusters, grouping genes with similar behaviors and maintaining a very low mean squared residue. © Springer-Verlag Berlin Heidelberg 2007.
Start page
831
End page
839
Volume
4881 LNCS
Language
English
OCDE Knowledge area
Bioinformática
Scopus EID
2-s2.0-38449116599
Source
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
ISSN of the container
03029743
ISBN of the container
9783540772255
Conference
8th International Conference on Intelligent Data Engineering and Automated Learning, IDEAL 2007
Sources of information:
Directorio de Producción Científica
Scopus