Title
Biclustering of gene expression data based on simUI semantic similarity measure
Date Issued
01 January 2016
Access level
open access
Resource Type
conference paper
Author(s)
Nepomuceno J.
Troncoso A.
Nepomuceno-Chamorro I.
Universidad Pablo de Olavide
Publisher(s)
Springer Verlag
Abstract
Biclustering is an unsupervised machine learning technique that simultaneously clusters genes and conditions in gene expression data. Gene Ontology (GO) is usually used in this context to validate the biological relevance of the results. However, although the integration of biological information from different sources is one of the research directions in Bioinformatics, GO is not used in biclustering as an input data. A scatter search-based algorithm that integrates GO information during the biclustering search process is presented in this paper. SimUI is a GO semantic similarity measure that defines a distance between two genes. The algorithm optimizes a fitness function that uses SimUI to integrate the biological information stored in GO. Experimental results analyze the effect of integration of the biological information through this measure. A SimUI fitness function configuration is experimentally studied in a scatter search-based biclustering algorithm.
Start page
685
End page
693
Volume
9648
Language
English
OCDE Knowledge area
Bioinformática
Scopus EID
2-s2.0-84964043660
ISBN
9783319320335
Source
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Resource of which it is part
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
ISSN of the container
03029743
ISBN of the container
978-331932033-5
Conference
11th International Conference on Hybrid Artificial Intelligent Systems, HAIS 2016
Sponsor(s)
We would like to thank Spanish Ministry of Science and Innovation, Junta de Andalucía and University Pablo de Olavide for the financial support under projects TIN2011-28956-C02-02, TIN2014-55894-C2-R, P12-TIC-1728 and APPB813097, respectively.
Sources of information: Directorio de Producción Científica Scopus