Understanding climate variability requires good quality high resolution spatially and temporally varying ocean fields due to its decisive role in regulating the region's climate, including the Indian summer monsoon. In this regard, we employed a new high-resolution regional earth system model (RESM), namely ROM over CORDEX South Asia. We demonstrated the performance of the RESM and its added value over the global earth system model, namely MPI-ESM, in simulating the hydrographic characteristics and associated mechanism over the tropical Indian Ocean (TIO). ROM shows better skill than MPI-ESM in simulating the near-surface and subsurface characteristics of the ocean. However, larger added values are noticed for subsurface (>350 m) thermal structure. MPI-ESM's cold sea surface temperature (SST) bias is reduced in ROM which is associated with weaker winds, anomalous cyclonic wind stress curl, enhanced stratifications, and a shallower mixed layer, resulting in greater upper-ocean heating. The reduced SST bias is also consistent with improved ocean meridional heat transport (OMHT) in ROM. For example, reduced southward export of OMHT over the Arabian Sea increases the surface warming by ~4%, reducing the RMSE by ~0.2–0.6°C and becoming closer to observation. The anomalous cyclonic wind stress curl, in turn, caused mixed layer stratifications in the western Indian Ocean. The advective heat transfer from the south-eastern Indian Ocean to the western Indian Ocean reduced oceanic cooling by vertical processes, overcame the cooling by the net loss of surface heat fluxes, and favoured the TIO's surface warming.