Title
Genomic sequence derived simple sequence repeats markers: A case study with Medicago spp.
Date Issued
01 January 2002
Access level
open access
Resource Type
journal article
Author(s)
Mahalakshmi V.
Aparna P.
Ramadevi S.
International Institute of Tropical Agriculture
Publisher(s)
Electronic Journal of Biotechnology
Abstract
Simple sequence repeats (SSR) or micro-satellites are becoming standard DNA markers for plant genome analysis and are being used as markers in marker assisted breeding. De novo generation of micro-satellite markers through laboratory-based screening of SSR-enriched genomic libraries is highly time consuming and expensive. An alternative is to screen the public databases of related model species where abundant sequence data is already available. All the genomic sequences of Medicago from the public domain database were searched and analysed of di, tri, and tetra nucleotide repeats. Of the total of about 156,000 sequences which were searched, 7325 sequences were found to contain repeat motif and may yield SSR which will yield product sizes of around 200 bp. Of these the most abundantly found repeats were the tri-nucleotide (5210) group. Except for a very small proportion (436), these link to the gene annotation database at TIGR (http://www.tigr.org). To facilitate further exploration of this resource, a dynamic database with options to search and link to other resources is available at (http://www.icrisat.org/text/research/grep/homepage/ge nomics/medssrsl.asp) and on CDs from V.Mahalakshmi@cgiar.org. © 2002 by Universidad Católica de Valparaíso.
Start page
233
End page
242
Volume
5
Issue
3
Language
English
OCDE Knowledge area
Genética, Herencia
Scopus EID
2-s2.0-54249132255
Source
Electronic Journal of Biotechnology
ISSN of the container
07173458
Sources of information: Directorio de Producción Científica Scopus