Title
Wrapping of DNA around the E. coli RNA polymerase open promoter complex
Date Issued
16 August 1999
Access level
open access
Resource Type
journal article
Author(s)
Universidad de California
Abstract
High-resolution atomic force microscopy (AFM) and biochemical methods were used to analyze the structure of Escherichia coli RNA polymerase·σ70 (RNAP) open promoter complex (RP(O)). A detailed analysis of a large number of molecules shows that the DNA contour length of RP(O) is reduced by ~ 30 nm (~ 90 bp) relative to the free DNA. The DNA bend angle measured with different methods varied from 55 to 88°. The contour length reduction and the DNA bend angle were much less in inactive RNAP-DNA complexes. These results, together with previously published observations, strongly support the notion that during transcription initiation, the promoter DNA wraps nearly 300°around the polymerase. This amount of DNA bending requires an energy of 60 kJ/mol. The structural analysis of the open promoter complexes revealed that two-thirds of the DNA wrapped around the RNAP is part of a region upstream of the transcription start site, whereas the remaining one-third is part of the downstream region. Based on these data, a model of the σ70·Rp(O), conformation is proposed.
Start page
4464
End page
4475
Volume
18
Issue
16
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular
Tecnología para la identificación y funcionamiento del ADN, proteínas y enzimas y como influencian la enfermedad)
Subjects
Scopus EID
2-s2.0-0033575742
PubMed ID
Source
EMBO Journal
ISSN of the container
02614189
Sponsor(s)
National Institute of General Medical Sciences: R37GM032543.
Sources of information:
Directorio de Producción Científica
Scopus