Title
Molecular Dynamics Simulation of Kynurenine Aminotransferase Type II with Nicotine as a Ligand: A Possible Biochemical Role of Nicotine in Schizophrenia
Date Issued
2019
Access level
open access
Resource Type
journal article
Publisher(s)
American Chemical Society
Abstract
Homodimeric KATII is an enzyme involved in l-kynurenine transamination to kynurenic acid. The increase in kynurenic acid concentration is predominant in schizophrenia and other disorders. Currently, the search for new KATII inhibitors continues to be a challenge. The aim of this work was to analyze the possible role of nicotine in KATII inhibition and compare it with the reversible inhibitor NS1502. We have used computational methods of quantum mechanics, docking, molecular dynamics, and binding energy (molecular mechanics/Poisson-Boltzmann surface area). The results of chemical reactivity showed that the nucleophilic and electrophilic attacks would be more significant in nicotine than in NS1502. The molecular dynamics simulations provided a molecular understanding of the binding interaction of nicotine and NS1502 with KATII. The nicotine binding energy was similar to that of the NS1502 compound; both were placed in the same pocket. Furthermore, the energy distribution analysis of ligands to cofactor lysine pyridoxal-5′-phosphate presented similar values in both cases; consequently, the electrostatic potential of the active site was positive, which leads us to believe that nicotine behaves as the reversible inhibitor NS1502 and could play a neuroprotective role in schizophrenia. © 2019 American Chemical Society.
Start page
710
End page
717
Volume
4
Issue
1
Number
1
Language
English
Scopus EID
2-s2.0-85059831788
Source
ACS Omega
ISSN of the container
2470-1343
Sponsor(s)
The authors thank the financial support by CONCYTEC under Project 140-2015 FONDECYT. Badhin Gomeź is grateful for UAM Iztapalapa for the use of licensed Gaussian 09 software in the Yoltla supercomputer.
Sources of information: Directorio de Producción Científica