cris.boxmetadata.label.title
Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees
cris.boxmetadata.label.dateissued
15 browse.startsWith.months.september 2019
cris.boxmetadata.label.accesslevel
metadata only access
cris.boxmetadata.label.resourcetype
journal article
cris.boxmetadata.label.authors
Chaves C.L.
Blanc-Jolivet C.
Sebbenn A.M.
Mader M.
Meyer-Sand B.R.V.
Paredes-Villanueva K.
HONORIO CORONADO, EURIDICE NORA
GARCIA DAVILA, CARMEN ROSA
Tysklind N.
Troispoux V.
Massot M.
Degen B.
cris.boxmetadata.label.publisher
Springer Netherlands
cris.boxmetadata.label.abstract
We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.
cris.boxmetadata.label.citationstartpage
329
cris.boxmetadata.label.citationendpage
331
cris.boxmetadata.label.volume
11
cris.boxmetadata.label.issue
3
cris.boxmetadata.label.language
English
cris.boxmetadata.label.ocdeknowledgeArea
Genética, Herencia
Forestal
cris.boxmetadata.label.subjects
cris.boxmetadata.label.publicationversion
Version of Record
cris.boxmetadata.label.doi
cris.boxmetadata.label.scopusidentifier
2-s2.0-85066906416
cris.boxmetadata.label.source
Conservation Genetics Resources
cris.boxmetadata.label.containerissn
18777252
cris.boxmetadata.label.sponsor
This research was supported by the German Federal Ministry of Food and Agriculture (BMEL) with the program International Sustainable Forest Management and the Conselho Nacional de Ciência e Tecnologia (CAPES) that granted a PhD scholarship to C.L Chaves. Genotyping was performed at the Genome Transcriptome Facility of Bordeaux (Grants from Investissements d’Avenir, Convention attributive d’aide EquipEx Xyloforest ANR-10-EQPX-16-01, the European Union, FEDER No. 2003227 and Investissements d’avenir, No. ANR-10-EQPX-16-01 and CEBA: ANR-10-LABX-25-01 to the UMR EcoFoG). Sampling permits n49369 (Chico Mendes Biodiversity Institute, Brasil), MMAYA/VMABCCGDF/ DGBAP/MEG No. 0280/2016 (Bolivia), R.D. No. 001-2016- SERNANP-DGANP, R.D. No. 109-2015-SERFOR-DGGSPFFS, R.D. No. 230-2016-SERFOR-DGGSPFFS, Contrato No. 001-2016-SERFOR-DGGSPFFS-DGSPF (Peru) were granted for field work. We are also grateful to colleagues from IIAP, INRA French Guiana, Office National des Forêts and Thuenen for their assistance during field and laboratory work.
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Directorio de Producción Científica
Scopus