Title
Human-sars-cov-2 interactome and human genetic diversity: Tmprss2-rs2070788, associated with severe influenza, and its population genetics caveats in native americans
Date Issued
01 January 2021
Access level
open access
Resource Type
journal article
Author(s)
Kehdy F.S.G.
Pita-Oliveira M.
Scudeler M.M.
Torres-Loureiro S.
Zolini C.
Moreira R.
Michelin L.A.
Alvim I.
Silva-Carvalho C.
Furlan V.C.
Aquino M.M.
Soares-Souza G.B.
Vasquez-Dominguez A.
Neira C.S.
Aguiar R.S.
Verdugo R.A.
O`connor T.D.
Leal T.P.
Rodrigues-Soares F.
Laboratório Nacional de Computação Científica
Universidade Federal de Minas Gerais
Publisher(s)
Brazilian Journal of Genetics
Abstract
For human/SARS-CoV-2 interactome genes ACE2, TMPRSS2 and BSG, there is a convincing evidence of association in Asians with influenza-induced SARS for TMPRSS2-rs2070788, tag-SNP of the eQTL rs383510. This case illustrates the importance of population genetics and of sequencing data in the design of genetic association studies in different human populations: the high linkage disequilibrium (LD) between rs2070788 and rs383510 is Asian-specific. Leveraging on a combination of genotyping and sequencing data for Native Americans (neglected in genetic studies), we show that while their frequencies of the Asian tag-SNP rs2070788 is, surprisingly, the highest worldwide, it is not in LD with the eQTL rs383510, that therefore, should be directly genotyped in genetic association studies of SARS in populations with Native American ancestry.
Volume
44
Issue
1
Language
English
OCDE Knowledge area
Sistema respiratorio Enfermedades infecciosas
Scopus EID
2-s2.0-85114294281
Source
Genetics and Molecular Biology
ISSN of the container
1415-4757
Sponsor(s)
This work was funded by CNPq, CAPES, Department of Science and Technology of the Brazilian Ministry of Health (DECIT/MS), the Peruvian Genome Project from the Peruvian National Institute of Health and grants FONDEF D10I1007, D10E1007 and FONDEQUIP EQM140157 (CONICYT, Chile).
Sources of information: Directorio de Producción Científica Scopus