Title
Transcription factors IIS and IIF enhance transcription efficiency by differentially modifying RNA polymerase pausing dynamics
Date Issued
04 March 2014
Access level
open access
Resource Type
journal article
Author(s)
Ishibashi T.
Dangkulwanich M.
Lionberger T.A.
Lubkowska L.
Ponticelli A.S.
Kashlev M.
University of California
Lawrence Berkeley National Laboratory
Abstract
Transcription factors IIS (TFIIS) and IIF (TFIIF) are known to stimulate transcription elongation. Here, we use a single-molecule transcription elongation assay to study the effects of both factors. We find that these transcription factors enhance overall transcription elongation by reducing the lifetime of transcriptional pauses and that TFIIF also decreases the probability of pause entry. Furthermore, we observe that both factors enhance the processivity of RNA polymerase II through the nucleosomal barrier. The effects of TFIIS and TFIIF are quantitatively described using the linear Brownian ratchet kinetic model for transcription elongation and the backtracking model for transcriptional pauses, modified to account for the effects of the transcription factors. Our findings help elucidate the molecular mechanisms by which transcription factors modulate gene expression.
Start page
3419
End page
3424
Volume
111
Issue
9
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular Biofísica
Scopus EID
2-s2.0-84895786265
PubMed ID
Source
Proceedings of the National Academy of Sciences of the United States of America
ISSN of the container
00278424
Sponsor(s)
National Institutes of Health R01-GM032543 National Cancer Institute ZIABC010795 NCI
Sources of information: Directorio de Producción Científica Scopus