Title
Comparison of GA and PSO performance in parameter estimation of microbial growth models: A case-study using experimental data
Date Issued
01 January 2010
Access level
open access
Resource Type
conference paper
Author(s)
Calçada D.
Rosa A.
Duarte L.C.
Laboratório Nacional de Energia e Geologia
Abstract
This work examined the performance of a genetic algorithm (GA) and particle swarm optimization (PSO) in parameter estimation for a yeast growth kinetic model. Fitting the model's predictions simultaneously to three replicates of the same experiment, we used the variability among replicates as a criterion to evaluate the optimization result, since it reflects the biological variability characteristic of these systems. The performance of each algorithm was studied using 12 distinct tuning settings: a) in the GA, the tuning addressed different combinations of crossover fraction, and crossover and mutation functions; b) in the PSO, three different convergence behavior types (convergent with and without oscillations and divergent) were tested and the local and global weights were varied. The best objective function values were obtained when the PSO had convergent oscillatory behavior and a local acceleration larger than the global acceleration.
Number
5586489
Language
English
OCDE Knowledge area
Biología del desarrollo Métodos de investigación bioquímica
Scopus EID
2-s2.0-79959415165
Resource of which it is part
2010 IEEE World Congress on Computational Intelligence, WCCI 2010 - 2010 IEEE Congress on Evolutionary Computation, CEC 2010
ISBN of the container
978-142446910-9
Conference
2010 6th IEEE World Congress on Computational Intelligence, WCCI 2010 - 2010 IEEE Congress on Evolutionary Computation, CEC 2010
Sources of information: Directorio de Producción Científica Scopus