Title
Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
Date Issued
07 December 2017
Access level
open access
Resource Type
journal article
Author(s)
Shaffer J.R.
Li J.
Lee M.K.
Roosenboom J.
Orlova E.
Adhikari K.
Agee M.
Alipanahi B.
Auton A.
Bell R.K.
Bryc K.
Elson S.L.
Fontanillas P.
Furlotte N.A.
Hinds D.A.
Hromatka B.S.
Huber K.E.
Kleinman A.
Litterman N.K.
McIntyre M.H.
Mountain J.L.
Noblin E.S.
Northover C.A.M.
Pitts S.J.
Sathirapongsasuti J.F.
Sazonova O.V.
Shelton J.F.
Shringarpure S.
Tian C.
Tung J.Y.
Vacic V.
Wilson C.H.
Schuler-Faccini L.
Bortolini M.C.
Canizales-Quinteros S.
Rothhammer F.
Bedoya G.
González-José R.
Pfeffer P.E.
Wollenschlaeger C.A.
Hecht J.T.
Wehby G.L.
Moreno L.M.
Ding A.
Jin L.
Yang Y.
Carlson J.C.
Leslie E.J.
Feingold E.
Marazita M.L.
Hinds D.A.
Cox T.C.
Wang S.
Ruiz-Linares A.
Weinberg S.M.
Publisher(s)
Cell Press
Abstract
The genetic basis of earlobe attachment has been a matter of debate since the early 20th century, such that geneticists argue both for and against polygenic inheritance. Recent genetic studies have identified a few loci associated with the trait, but large-scale analyses are still lacking. Here, we performed a genome-wide association study of lobe attachment in a multiethnic sample of 74,660 individuals from four cohorts (three with the trait scored by an expert rater and one with the trait self-reported). Meta-analysis of the three expert-rater-scored cohorts revealed six associated loci harboring numerous candidate genes, including EDAR, SP5, MRPS22, ADGRG6 (GPR126), KIAA1217, and PAX9. The large self-reported 23andMe cohort recapitulated each of these six loci. Moreover, meta-analysis across all four cohorts revealed a total of 49 significant (p < 5 × 10−8) loci. Annotation and enrichment analyses of these 49 loci showed strong evidence of genes involved in ear development and syndromes with auricular phenotypes. RNA sequencing data from both human fetal ear and mouse second branchial arch tissue confirmed that genes located among associated loci showed evidence of expression. These results provide strong evidence for the polygenic nature of earlobe attachment and offer insights into the biological basis of normal and abnormal ear development.
Start page
913
End page
924
Volume
101
Issue
6
Language
English
OCDE Knowledge area
Genética humana
Scopus EID
2-s2.0-85035787162
PubMed ID
Source
American Journal of Human Genetics
ISSN of the container
00029297
Sponsor(s)
We thank the participants of the 3D Facial Norms Project, CANDELA, and the Taizhou Longitudinal Study for their contributions toward this effort. We thank the research participants and employees of 23andMe for making this work possible. We thank Daniela Luquetti, Esra Camci, and Jessica Rosin (Seattle Children’s Research Institute [SCRI]) and Mei Deng and Ian Glass (Birth Defects Research Laboratory, University of Washington) for contributions to tissue collection and RNA preparation for sequencing and Andrew Timms (SCRI) for initial bioinformatics processing. This work was funded by the following grants and contracts: Chinese Academy of Sciences Strategic Priority Research Program grant XDB13041000 (S.W.); National Natural Science Foundation of China grant 91631307 (S.W.), National Institute of Dental and Craniofacial Research grants and contracts U01-DE020078 (S.M.W. and M.L.M.), U01-DE020057 (M.L.M. and Jeffery C. Murray), R01-DE016148 (M.L.M. and S.M.W.), R00-DE02560 (E.J.L.), R01-DE027023 (S.M.W. and J.R.S.), and HHSN268201200008I (Center for Inherited Disease Research, Johns Hopkins University); National Human Genome Research Institute grant X01-HG007821 (M.L.M., S.M.W., and E.F.); Centers for Disease Control grant R01-DD000295 (G.L.W.); Leverhulme Trust grant F/07 134/DF (A.R.-L.); Biotechnology and Biological Sciences Research Council grant BB/I021213/1 (A.R.-L.); and the Laurel Foundation Endowment for Craniofacial Research (T.C.C.).
Sources of information: Directorio de Producción Científica Scopus