Title
Rhizobium etli taxonomy revised with novel genomic data and analyses
Date Issued
01 September 2012
Access level
metadata only access
Resource Type
research article
Author(s)
López-Guerrero M.G.
Velázquez E.
Rogel M.A.
Acosta J.L.
Gónzalez V.
Martínez J.
Martínez-Romero E.
Abstract
The taxonomic position of Phaseolus vulgaris rhizobial strains with available sequenced genomes was examined. Phylogenetic analyses with concatenated conserved genomic fragments accounting for over half of each genome showed that Rhizobium strains CIAT 652, Ch24-10 (newly reported genome) and CNPAF 512 constituted a well-supported group independent from Rhizobium etli CFN 42T. DNA-DNA hybridization results indicated that CIAT 652, Ch24-10 and CNPAF 512 could correspond to R. etli, although the hybridization values were at the borderline that distinguishes different species. In contrast, experimental hybridization results were higher (over 80%) with Rhizobium phaseoli type strain ATCC 14482T in congruence to phylogenetic and ANIm analyses. The latter criterion allowed the reclassification of R. etli strains 8C-3 and Brasil5 as R. phaseoli. It was therefore concluded, based on all the evidence, that the CIAT 652, Ch24-10, and CNPAF 512 strains should be reclassified as R. phaseoli in spite of several common features linking them to R. etli. The R. phaseoli and R. etli speciation process seems to be a more recent event than the speciation that has occurred among other sister species, such as R. leguminosarum-R. etli or R. rhizogenes-R. tropici. © 2012 Elsevier GmbH.
Start page
353
End page
358
Volume
35
Issue
6
Language
English
OCDE Knowledge area
Otros temas de Biología
Biología celular, Microbiología
Subjects
Scopus EID
2-s2.0-84865421432
PubMed ID
Source
Systematic and Applied Microbiology
ISSN of the container
07232020
Sponsor(s)
To PAPIIT IN2054 from UNAM, CONACyT CB 131499, the SUBNARGEM (Subsistema Nacional de Recursos Genéticos Microbianos) grant from SAGARPA Mexico for financial support, and Michael Dunn for kindly reviewing the manuscript. Martha G. López-Guerrero acknowledges the CONACyT fellowship during her Ph.D. studies in the Doctorado en Ciencias Biomédicas program at UNAM.
Sources of information:
Directorio de Producción Científica
Scopus