Title
A local search in Scatter Search for improving Biclusters
Date Issued
23 December 2011
Access level
open access
Resource Type
conference paper
Author(s)
Nepomuceno J.
Troncoso A.
Pablo de Olavide University
Abstract
Scatter Search is a population-based metaheuristic that emphasizes systematic processes against random procedures. A local search procedure is added to a Scatter Search for Biclustering in order to improve the quality of biclusters. This local search constitutes the existing Improvement Method in most of Scatter Search schemes which intensifies the optimization process, and, consequently, improves the quality of biclusters according to a fitness function. The fitness function is based on linear correlations among genes and, therefore, biclusters with shifting and scaling patterns are obtained. Thus, the improvement of a bicluster consists in removing every pair of genes of such bicluster that has a correlation lower than a given threshold which is automatically chosen by the algorithm. Experimental results from a Yeast microarray data set with different stress conditions have been reported and compared to another algorithm based on Scatter Search recently published in the literature. Experiments show a remarkable performance of the Biclustering algorithm with the proposed local search. © 2011 IEEE.
Start page
521
End page
526
Language
English
OCDE Knowledge area
Informática y Ciencias de la Información Matemáticas
Scopus EID
2-s2.0-83755228657
ISBN
9781457711237
ISBN of the container
978-145771123-7
DOI of the container
10.1109/NaBIC.2011.6089643
Conference
Proceedings of the 2011 3rd World Congress on Nature and Biologically Inspired Computing, NaBIC 2011
Sources of information: Directorio de Producción Científica Scopus