Title
Quality measures for gene expression biclusters
Date Issued
12 March 2015
Access level
open access
Resource Type
journal article
Author(s)
Pontes B.
Girldez R.
Pablo de Olavide University
Publisher(s)
Public Library of Science
Abstract
An noticeable number of biclustering approaches have been proposed proposed for the study of gene expression data, especially for discovering functionally related gene sets under different subsets of experimental conditions. In this context, recognizing groups of co-expressed or co-regulated genes, that is, genes which follow a similar expression pattern, is one of the main objectives. Due to the problem complexity, heuristic searches are usually used instead of exhaustive algorithms. Furthermore, most of biclustering approaches use a measure or cost function that determines the quality of biclusters. Having a suitable quality metric for bicluster is a critical aspect, not only for guiding the search, but also for establishing a comparison criteria among the results obtained by different biclustering techniques. In this paper, we analyse a large number of existing approaches to quality measures for gene expression biclusters, as well as we present a comparative study of them based on their capability to recognize different expression patterns in biclusters.
Volume
10
Issue
3
Language
English
OCDE Knowledge area
Estadísticas, Probabilidad Ciencias de la computación
Scopus EID
2-s2.0-84929501005
PubMed ID
Source
PLoS ONE
ISSN of the container
19326203
Sources of information: Directorio de Producción Científica Scopus