Title
Time-efficient sparse analysis of histopathological whole slide images
Date Issued
01 October 2011
Access level
open access
Resource Type
journal article
Author(s)
Huang C.H.
Veillard A.
Roux L.
Loménie N.
Centre National de la Recherche Scientifique
Abstract
Histopathological examination is a powerful standard for the prognosis of critical diseases. But, despite significant advances in high-speed and high-resolution scanning devices or in virtual exploration capabilities, the clinical analysis of whole slide images (WSI) largely remains the work of human experts. We propose an innovative platform in which multi-scale computer vision algorithms perform fast analysis of a histopathological WSI. It relies on application-driven for high-resolution and generic for low-resolution image analysis algorithms embedded in a multi-scale framework to rapidly identify the high power fields of interest used by the pathologist to assess a global grading. GPU technologies as well speed up the global time-efficiency of the system. Sparse coding and dynamic sampling constitute the keystone of our approach. These methods are implemented within a computer-aided breast biopsy analysis application based on histopathology images and designed in collaboration with a pathology department. The current ground truth slides correspond to about 36,000 high magnification (40×) high power fields. The processing time to achieve automatic WSI analysis is on a par with the pathologist's performance (about ten minutes a WSI), which constitutes by itself a major contribution of the proposed methodology. © 2010 Elsevier Ltd.
Start page
579
End page
591
Volume
35
Issue
August 7
Language
English
OCDE Knowledge area
Ciencias de la computación Radiología, Medicina nuclear, Imágenes médicas
Scopus EID
2-s2.0-80052312476
PubMed ID
Source
Computerized Medical Imaging and Graphics
ISSN of the container
08956111
Sponsor(s)
This study has been partially supported by the MMedWeb (MMedWeb A*STAR/SERC: http://ipal.i2r.a-star.edu.sg/projects.htm ) grant A*STAR SERC 052 101 0103 (NUS R-252-000-319-305) and by the ONCO-MEDIA project (ONCO-MEDIA, ICT Asia program: http://www.onco-media.com ). We would like to thank Dr. Jacques Klossa from TRIBVN company, Paris, France (TRIBVN: http://www.tribvn.com/ ) for his valuable expertise and support during this study. We also would like to thank Dr. Karklin Yan from New York University for the fruitful discussions about sparse coding and its implementation. This work was supported in part by grant COST Action IC0604 EURO-TELEPATH “Telepathology Network in Europe”.
Sources of information: Directorio de Producción Científica Scopus