Title
Stretching of single collapsed DNA molecules
Date Issued
01 January 2000
Access level
open access
Resource Type
journal article
Author(s)
Baumann C.G.
Bloomfield V.A.
Smith S.B.
Wang M.D.
Block S.M.
University of California
Publisher(s)
Biophysical Society
Abstract
The elastic response of single plasmid and lambda phage DNA molecules was probed using optical tweezers at concentrations of trivalent cations that provoked DNA condensation in bulk. For uncondensed plasmids, the persistence length, P, decreased with increasing spermidine concentration before reaching a limiting value 40 nm. When condensed plasmids were stretched, two types of behavior were observed: a stick-release pattern and a plateau at ~20 pN. These behaviors are attributed to unpacking from a condensed structure, such as coiled DNA. Similarly, condensing concentrations of hexaammine cobalt(III) (CoHex) and spermidine induced extensive changes in the low and high force elasticity of lambda DNA. The high force (5-15 pN) entropic elasticity showed worm-like chain (WLC) behavior, with P two- to fivefold lower than in low monovalent salt. At lower forces, a 14-pN plateau abruptly appeared. This corresponds to an intramolecular attraction of 0.083-0.33 kT/bp, consistent with osmotic stress measurements in bulk condensed DNA. The intramolecular attractive force with CoHex is larger than with spermidine, consistent with the greater efficiency with which CoHex condenses DNA in bulk. The transition from WLC behavior to condensation occurs at an extension about 85% of the contour length, permitting looping and nucleation of condensation. Approximately half as many base pairs are required to nucleate collapse in a stretched chain when CoHex is the condensing agent.
Start page
1965
End page
1978
Volume
78
Issue
4
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular Biofísica
Scopus EID
2-s2.0-0034071761
PubMed ID
Source
Biophysical Journal
ISSN of the container
00063495
Sponsor(s)
C. G. Baumann thanks I. Rouzina for many helpful discussions and S. Fiddler for her hospitality during visits to the University of Oregon. M. W. and S. B. thank Dr. Eric Siggia for his helpful advice. This work was supported in part by National Science Foundation grant MBC 9118482 and National Institutes of Health grant GM 32543 to C. Bustamante, National Institutes of Health Grant GM 28093 to V. Bloomfield, and an National Institutes of Health Traineeship (GM 08277) to C. G. Baumann; and by the Cancer Research Fund of the Damon Runyon - Walter Winchell Foundation fellowship, DRG-1326 to M. D. Wang.
Sources of information: Directorio de Producción Científica Scopus