Title
Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
Date Issued
03 September 2002
Access level
open access
Resource Type
journal article
Author(s)
Forde N.R.
Izhaky D.
Woodcock G.R.
Wuite G.J.L.
University of California
Abstract
Escherichia coli RNA polymerase translocates along the DNA discontinuously during the elongation phase of transcription, spending proportionally more time at some template positions, known as pause and arrest sites, than at others. Current models of elongation suggest that the enzyme backtracks at these locations, but the dynamics are unresolved. Here, we study the role of lateral displacement in pausing and arrest by applying force to individually transcribing molecules. We find that an assisting mechanical force does not alter the translocation rate of the enzyme, but does reduce the efficiency of both pausing and arrest. Moreover, arrested molecules cannot be rescued by force, suggesting that arrest occurs by a bipartite mechanism: the enzyme backtracks along the DNA followed by a conformational change of the ternary complex (RNA polymerase, DNA and transcript), which cannot be reversed mechanically.
Start page
11682
End page
11687
Volume
99
Issue
18
Language
English
OCDE Knowledge area
Genética, Herencia Biología
Scopus EID
2-s2.0-0037015022
PubMed ID
Source
Proceedings of the National Academy of Sciences of the United States of America
ISSN of the container
00278424
Sponsor(s)
National Institute of General Medical Sciences R37GM032543 NIGMS.
Sources of information: Directorio de Producción Científica Scopus