The application of nanomaterials (NMs) depends on several characteristics, including polydispersity, shape, surface charge, and composition, among others. However, the specific surface properties of bare NMs induce aggregation, reducing their utilization. Thus, different surface coverages have been developed to avoid or minimize NMs aggregation, making them more stable for the envisioned applications. Carbon-based NMs are usually coated with metals, while metal-based NMs are coated with natural organic compounds including chitosan, dextran, alginate, or citric acid. On the other hand, the coating process is expected to modify the surface properties of the NMs; several coating agents add negative or positive charges to the particles, changing their interaction with the environment. In this review, we analyze the most recent literature about coating processes and the behavior of coated NMs in soil, water, and plants. In particular, the behavior of the most commercialized metal-based NMs, such as TiO2, ZnO, CeO2, CuO, Ag, and Au, and carbon-based NMs are discussed in this review. The available articles about the effects of coated NMs in plants are discussed. Up to now, there is no uniformity in the information to ensure that the surface coverage increases or decreases the effects of NMs in plants. While some parameters are increased, others are decreased. Since the data is contradictory in some cases, the available literature does not allow researchers to determine what concentrations benefit the plants. This review highlights current results and future perspectives on the study of the effects of coated NMs in the environment.