Title
Energy-entropy dispersion relation in DNA sequences
Date Issued
01 October 2013
Access level
metadata only access
Resource Type
journal article
Publisher(s)
Elsevier B.V.
Abstract
For a number of virus- and bacterium genomes we use the concept of block entropy from information theory and compare it with the corresponding configurational energy, defined via the ionization energies of the nucleotides and a hopping term for their interactions in the sense of a tight-binding model. Additionally to the four-letter alphabet of the nucleotides we discuss a reduction to a two-letter alphabet. We find a well defined relation between block entropy and block energy for a not too large block length which can be interpreted as a generalized dispersion relation for all genome sequences. The relation can be used to look for enhanced interactions between virus and bacterium genomes. Well known examples for virus-virus and virus-bacterium interactions are analyzed along this line. © 2013 Elsevier B.V. All rights reserved.
Start page
4688
End page
4700
Volume
392
Issue
19
Language
English
OCDE Knowledge area
Física atómica, molecular y química Genética, Herencia
Scopus EID
2-s2.0-84880332421
Source
Physica A: Statistical Mechanics and its Applications
ISSN of the container
03784371
Sources of information: Directorio de Producción Científica Scopus