Title
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
Date Issued
02 March 2000
Access level
metadata only access
Resource Type
journal article
Author(s)
University of California
Abstract
T7 DNA polymerase catalyses DNA replication in vitro at rates of more than 100 bases per second and has a 3' → 5' exonuclease (nucleotide removing) activity at a separate active site. This enzyme possesses a 'right hand' shape which is common to most polymerases with fingers, palm and thumb domains. The rate-limiting step for replication is thought to involve a conformational change between an 'open fingers' state in which the active site samples nucleotides, and a 'closed' state in which nucleotide incorporation occurs. DNA polymerase must function as a molecular motor converting chemical energy into mechanical force as it moves over the template. Here we show, using a single-molecule assay based on the differential elasticity of single-stranded and double-stranded DNA, that mechanical force is generated during the rate-limiting step and that the motor can work against a maximum template tension of ~34 pN. Estimates of the mechanical and entropic work done by the enzyme show that T7 DNA polymerase organizes two template bases in the polymerization site during each catalytic cycle. We also find a force-induced 100-fold increase in exonucleolysis above 40 pN.
Start page
103
End page
106
Volume
404
Issue
6773
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular
Tecnología para la identificación y funcionamiento del ADN, proteínas y enzimas y como influencian la enfermedad)
DOI
Scopus EID
2-s2.0-0034594940
PubMed ID
Source
Nature
ISSN of the container
00280836
Sources of information:
Directorio de Producción Científica
Scopus