Title
Probing the Open Global Health Chemical Diversity Library for Multistage-Active Starting Points for Next-Generation Antimalarials
Date Issued
10 April 2020
Access level
open access
Resource Type
journal article
Author(s)
Abraham M.
Gagaring K.
Martino M.L.
Vanaerschot M.
Plouffe D.M.
Godinez-Macias K.P.
Du A.Y.
Wree M.
Antonova-Koch Y.
Eribez K.
Luth M.R.
Ottilie S.
Fidock D.A.
McNamara C.W.
Winzeler E.A.
University of California San Diego
Publisher(s)
American Chemical Society
Abstract
Most phenotypic screens aiming to discover new antimalarial chemotypes begin with low cost, high-throughput tests against the asexual blood stage (ABS) of the malaria parasite life cycle. Compounds active against the ABS are then sequentially tested in more difficult assays that predict whether a compound has other beneficial attributes. Although applying this strategy to new chemical libraries may yield new leads, repeated iterations may lead to diminishing returns and the rediscovery of chemotypes hitting well-known targets. Here, we adopted a different strategy to find starting points, testing 70,000 open source small molecules from the Global Health Chemical Diversity Library for activity against the liver stage, mature sexual stage, and asexual blood stage malaria parasites in parallel. In addition, instead of using an asexual assay that measures accumulated parasite DNA in the presence of compound (SYBR green), a real time luciferase-dependent parasite viability assay was used that distinguishes slow-acting (delayed death) from fast-acting compounds. Among 382 scaffolds with the activity confirmed by dose response (<10 μM), we discovered 68 novel delayed-death, 84 liver stage, and 68 stage V gametocyte inhibitors as well. Although 89% of the evaluated compounds had activity in only a single life cycle stage, we discovered six potent (half-maximal inhibitory concentration of <1 μM) multistage scaffolds, including a novel cytochrome bc1 chemotype. Our data further show the luciferase-based assays have higher sensitivity. Chemoinformatic analysis of positive and negative compounds identified scaffold families with a strong enrichment for activity against specific or multiple stages.
Start page
613
End page
628
Volume
6
Issue
4
Language
English
OCDE Knowledge area
Farmacología, Farmacia
Scopus EID
2-s2.0-85083537989
PubMed ID
Source
ACS Infectious Diseases
ISSN of the container
2373-8227
Sponsor(s)
This work was supported by a grant from the Bill & Melinda Gates Foundation (OPP1107194) as well as NIH (5R01AI090141 and R01AI103058). M.R.L. was supported in part by a Ruth L. Kirschstein Institutional National Research Award from the National Institute for General Medical Sciences, T32 GM008666. J.C. was supported from a Fogarty-International Center GloCal fellowship. We thank our colleagues from the Bill & Melinda Gates Foundation for sponsoring the development of the GHCDL, in addition to providing meaningful advice throughout the screening efforts. We would also like to thank Calibr’s Compound Management Group and the HTS team for supplying compound stocks for reconfirmation and for expertly conducting the asexual blood stage screens. These efforts were possible thanks to the University of Dundee Drug Discovery Unit carefully designing and curating the Global Health Chemical Diversity Library. DNA library preparation and sequencing were performed at the UCSD Institute for Genomic Medicine sequencing core. These data have been deposited in ChEMBL Neglected Tropical Disease (ChEMBL-NTD) archive under set 23 “Probing the Open Global Health Chemical Diversity Library for multistage-active starting points for next-generation antimalarials”.
Sources of information: Directorio de Producción Científica Scopus