Title
Protein modeling, molecular network and molecular dynamics study of newly sequenced interleukin-18 (IL-18) gene in Mus musculus
Date Issued
01 August 2019
Access level
metadata only access
Resource Type
journal article
Author(s)
Yadav B.S.
Chaturvedi N.
Marina N.
Yadav P.K.
Ganash M.
Ashraf G.M.
Ahmad K.
Baig M.H.
Universidad Autónoma de Chile
Publisher(s)
Wiley-Liss Inc.
Abstract
Interleukin-18 (IL-18) belongs to the superfamily of IL-1 protein and exerts a pleiotropic pro-inflammatory effect on the body. Generally, this protein is significantly involved in immune defense during infection in cells, but sometimes its anomalous activities produce some inflammatory diseases like rheumatoid arthritis and Crohn’s disease. In the present study, the IL-18 gene was isolated from mice and was subsequently cloned and sequenced. Further, the network analysis was carried out to explore the functional role of IL-18 protein in animals. The 3D protein structure of the IL-18 protein was generated and docked with appropriate 3-([3-cholamidopropyl]dimethylammonio)-1-propanesulfonate (CPS) ligand. Later the complex structure of the protein was subjected to molecular dynamics simulation (MDS) for 50 ns to determine the effect of ligand on protein. The network analysis explored the correlation of IL-18 protein with others proteins and their involvement in the different significant pathway to defend the cell from various diseases. As confirmed by MDS, the CPS:IL-18 complex was found to be highly stable. Our results further indicated that CPS ligand has the potential to act as a drug molecule, in future, for counteracting IL-18 activity. To date, no structural details were available for animal IL-18. Hence, the finding of this study will be useful in broadening the horizon towards a better understanding of the functional and structural aspects of IL-18 in animals.
Start page
14285
End page
14295
Volume
234
Issue
8
Language
English
OCDE Knowledge area
Bioinformática
Inmunología
Subjects
Scopus EID
2-s2.0-85059700583
PubMed ID
Source
Journal of Cellular Physiology
ISSN of the container
00219541
Sponsor(s)
The primary wet lab work was performed in Indian Veterinary Research Institute-ICAR, authors are thankful to the director for providing necessary facilities. N.C. would like to thank Tel Aviv University, Israel, for providing computational resources to perform molecular dynamics simulation.
Sources of information:
Directorio de Producción Científica
Scopus