Title
Variation in dental morphology and inference of continental ancestry in admixed Latin Americans
Date Issued
01 March 2019
Access level
open access
Resource Type
journal article
Author(s)
Delgado M.
Ramírez L.M.
Adhikari K.
Fuentes-Guajardo M.
Zanolli C.
Gonzalez-José R.
Canizales S.
Bortolini M.C.
Rothhammer F.
Bedoya G.
Ruiz-Linares A.
Publisher(s)
Wiley-Liss Inc.
Abstract
Objectives: To investigate the variation in dental nonmetric traits and to evaluate the utility of this variation for inferring genetic ancestry proportions in a sample of admixed Latin Americans. Materials and Methods: We characterized a sample from Colombia (N = 477) for 34 dental traits and obtained estimates of individual Native American, European, and African ancestry using genome-wide SNP data. We tested for correlation between dental traits, genetic ancestry, age, and sex. We carried out a biodistance analysis between the Colombian sample and reference continental population samples using the mean measure of divergence statistic calculated from dental trait frequencies. We evaluated the inference of genetic ancestry from dental traits using a regression approach (with 10-fold cross-validation) as well as by testing the correlation between estimates of ancestry obtained from genetic and dental data. Results: Latin Americans show intermediate dental trait frequencies when compared to Native Americans, Europeans, and Africans. Significant correlations were observed for several dental traits, genetic ancestry, age, and sex. The biodistance analysis displayed a closer relationship of Colombians to Europeans than to Native Americans and Africans. Mean ancestry estimates obtained from the dental data are similar to the genetic estimates (Native American: 32% vs. 28%, European: 59% vs. 63%, and African: 9% vs. 9%, respectively). However, dental features provided low predictive power for genetic ancestry of individuals in both approaches tested (R 2 < 5% for all genetic ancestries across methods). Discussion: The frequency of dental traits in Latin Americans reflects their admixed Native American, European and African ancestry and can provide reasonable average estimates of genetic ancestry. However, the accuracy of individual genetic ancestry estimates is relatively low, probably influenced by the continental differentiation of dental traits, their genetic architecture, and the distribution of genetic ancestry in the individuals examined.
Start page
438
End page
447
Volume
168
Issue
3
Language
English
OCDE Knowledge area
Genética, Herencia Genética humana Antropología
Scopus EID
2-s2.0-85059012943
PubMed ID
Source
American Journal of Physical Anthropology
ISSN of the container
00029483
Sponsor(s)
information Comit? para el Desarrollo de la Investigaci?n (CODI), Universidad de Antioquia, Colombia, Grant/Award Number: CODI 2014-1124; Wenner-Gren Foundation; Wellcome Investigator Award, Grant/Award Number: WT107055AIA; National Natural Science Foundation of China, Grant/Award Number: 31771393; BBSRC, Grant/Award Number: BB/I021213/1; Leverhulme Trust, Grant/Award Number: F/07 134/DFWe thank the volunteers for their enthusiastic support for this research. We are very grateful to Universidad de Antioquia, Medell?n, Colombia and Universidad de Tarapac?, Arica, Chile for kindly providing facilities for the assessment of volunteers. We are indebted to Lina Maria Parra (Universidad Libre de Colombia, Cali), Bernardo Salazar and Camilo Preciado (Facultad de Odontolog?a, Universidad de Antioquia, Medell?n) for their support during sample collection. We thank G. R. Scott and J. D. Irish for their clarifications on the reference population data used in the present research. We thank Peter Ellison (AJPA Associate Editor) and two anonymous reviewers for their helpful comments provided during the reviewing process. Work leading to this publication was funded by grants from the: Leverhulme Trust (F/07 134/DF), BBSRC (BB/I021213/1; to A. R. L.), Excellence Initiative of Aix-Marseille University??A*MIDEX (a French ?Investissements d'Avenir? programme; to A. R. L.), National Natural Science Foundation of China (31771393; to A. R. L.), Wenner-Gren Foundation (to M. D.), Universidad de Antioquia (CODI 2014-1124 to M. D. and L. M. R.), and UCL Global Engagement Fund (to K. A.). K. A. was also supported by a Wellcome Investigator Award WT107055AIA (to Prof. C. D. Stern). We thank the volunteers for their enthusiastic support for this research. We are very grateful to Universidad de Antioquia, Medellín, Colombia and Universidad de Tarapacá, Arica, Chile for kindly providing facilities for the assessment of volunteers. We are indebted to Lina Maria Parra (Universidad Libre de Colombia, Cali), Bernardo Salazar and Camilo Pre-ciado (Facultad de Odontología, Universidad de Antioquia, Medellín) for their support during sample collection. We thank G. R. Scott and J. D. Irish for their clarifications on the reference population data used in the present research. We thank Peter Ellison (AJPA Associate Editor) and two anonymous reviewers for their helpful comments provided during the reviewing process. Work leading to this publication was funded by grants from the: Leverhulme Trust (F/07 134/DF), BBSRC (BB/I021213/1; to A. R. L.), Excellence Initiative of Aix-Marseille University––A*MIDEX (a French “Investissements d'Avenir” programme; to A. R. L.), National Natural Science Foundation of China (31771393; to A. R. L.), Wenner-Gren Foundation (to M. D.), Universidad de Antioquia (CODI 2014-1124 to M. D. and L. M. R.), and UCL Global Engagement Fund (to K. A.). K. A. was also supported by a Wellcome Investigator Award WT107055AIA (to Prof. C. D. Stern).
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