Title
An effective measure for assessing the quality of biclusters
Date Issued
01 February 2012
Access level
open access
Resource Type
journal article
Author(s)
Divina F.
Pontes B.
Giráldez R.
Pablo de Olavide University
Abstract
Biclustering is becoming a popular technique for the study of gene expression data. This is mainly due to the capability of biclustering to address the data using various dimensions simultaneously, as opposed to clustering, which can use only one dimension at the time. Different heuristics have been proposed in order to discover interesting biclusters in data. Such heuristics have one common characteristic: they are guided by a measure that determines the quality of biclusters. It follows that defining such a measure is probably the most important aspect. One of the popular quality measure is the mean squared residue (MSR). However, it has been proven that MSR fails at identifying some kind of patterns. This motivates us to introduce a novel measure, called virtual error (VE), that overcomes this limitation. Results obtained by using VE confirm that it can identify interesting patterns that could not be found by MSR. © 2011 Elsevier Ltd.
Start page
245
End page
256
Volume
42
Issue
2
Language
English
OCDE Knowledge area
Informática y Ciencias de la Información
Scopus EID
2-s2.0-84855918173
PubMed ID
Source
Computers in Biology and Medicine
ISSN of the container
00104825
Sources of information: Directorio de Producción Científica Scopus