Title
Free energies and forces in helix-coil transition of homopolypeptides under stretching
Date Issued
25 May 2009
Access level
metadata only access
Resource Type
journal article
Publisher(s)
Royal Society of Chemistry
Abstract
We show here that constant velocity steered molecular dynamics (SMD) simulations of α-helices in a vacuum present a well defined plateau in the force-extension relationship for homopolypeptides having more than (approximately) twenty residues. With the processes being far away from equilibrium, the energies strongly depend on the stretching velocity. Importantly, for a given velocity variation, the energy variation depends also on the helix sequence. Additionally, our observations show that homopolypeptides made of ten different amino acids (Ala, Cys, Gln, Ile, Leu, Met, Phe, Ser, Thr and Val) present a linear helix-coil transition. © 2009 the Owner Societies.
Start page
4019
End page
4024
Volume
11
Issue
20
Language
English
OCDE Knowledge area
Química física Ingeniería mecánica
Scopus EID
2-s2.0-65649125544
PubMed ID
Source
Physical Chemistry Chemical Physics
ISSN of the container
14639076
Sources of information: Directorio de Producción Científica Scopus