Title
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases
Date Issued
22 July 2003
Access level
open access
Resource Type
journal article
Author(s)
Stone M.
Bryant Z.
Crisona N.
Smith S.
Vologodskii A.
Cozzarelli N.
University of California
Publisher(s)
National Academy of Sciences
Abstract
Escherichia coli topoisomerase (Topo) IV is an essential type II Topo that removes DNA entanglements created during DNA replication. Topo IV relaxes (+) supercoils much faster than (-) supercoils, promoting replication while sparing the essential (-) supercoils. Here, we investigate the mechanism underlying this chiral preference. Using DNA binding assays and a single-molecule DNA braiding system, we show that Topo IV recognizes the chiral crossings imposed by the left-handed superhelix of a (+) supercoiled DNA, rather than global topology, twist deformation, or local writhe. Monte Carlo simulations of braid, supercoil, and catenane configurations demonstrate how a preference for a single-crossing geometry during strand passage can allow Topo IV to perform its physiological functions. Single-enzyme braid relaxation experiments also provide a direct measure of the processivity of the enzyme and offer insight into its mechanochemical cycle.
Start page
8654
End page
8659
Volume
100
Issue
15
Language
English
OCDE Knowledge area
Genética humana Tecnología para la identificación y funcionamiento del ADN, proteínas y enzimas y como influencian la enfermedad)
Scopus EID
2-s2.0-0041306000
PubMed ID
Source
Proceedings of the National Academy of Sciences of the United States of America
ISSN of the container
00278424
Sources of information: Directorio de Producción Científica Scopus