Title
How RNA folds
Date Issued
22 October 1999
Access level
metadata only access
Resource Type
journal article
Author(s)
University of California Berkeley
Publisher(s)
Academic Press
Abstract
We describe the RNA folding problem and contrast it with the much more difficult protein folding problem. RNA has four similar monomer units, whereas proteins have 20 very different residues. The folding of RNA is hierarchical in that secondary structure is much more stable than tertiary folding. In RNA the two levels of folding (secondary and tertiary) can be experimentally separated by the presence or absence of Mg2+. Secondary structure can be predicted successfully from experimental thermodynamic data on secondary structure elements: helices, loops, and bulges. Tertiary interactions can then be added without much distortion of the secondary structure. These observations suggest a folding algorithm to predict the structure of an RNA from its sequence. However, to solve the RNA folding problem one needs thermodynamic data on tertiary structure interactions, and identification and characterization of metal-ion binding sites. These data, together with force versus extension measurements on single RNA molecules, should provide the information necessary to test and refine the proposed algorithm.
Start page
271
End page
281
Volume
293
Issue
2
Language
English
OCDE Knowledge area
Bioquímica, Biología molecular Biología celular, Microbiología
Scopus EID
2-s2.0-0345281589
PubMed ID
Source
Journal of Molecular Biology
ISSN of the container
00222836
Sponsor(s)
We thank Mr Ruben Gonzalez for providing the thermodynamic data used in Figure 4 and Dr Michael Schmitz for helpful comments. This research was supported in part by National Institute of Health Grant GM 10840 (I.T.), GM 32543 (C.B.) and NSF grant DBI9732140 (C.B.), and by the Department of Energy Grant DE-FG03-86ER60406 (I.T.).
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