Title
Biclusters evaluation based on shifting and scaling patterns
Date Issued
01 January 2007
Access level
open access
Resource Type
conference paper
Author(s)
Pablo de Olavide University
Publisher(s)
Springer Verlag
Abstract
Microarray techniques have motivated the develop of different methods to extract useful information from a biological point of view. Biclustering algorithms obtain a set of genes with the same behaviour over a group of experimental conditions from gene expression data. In order to evaluate the quality of a bicluster, it is useful to identify specific tendencies represented by patterns on data. These patterns describe the behaviour of a bicluster obtained previously by an adequate biclustering technique from gene expression data. In this paper a new measure for evaluating biclusters is proposed. This measure captures a special kind of patterns with scaling trends which represents quality patterns. They are not contemplated with the previous evaluating measure accepted in the literature. This work is a first step to investigate methods that search biclusters based on the concept of shift and scale invariance. Experimental results based on the yeast cell cycle and the human B-cell lymphoma datasets are reported. Finally, the performance of the proposed technique is compared with an optimization method based on the Nelder-Mead Simplex search algorithm. © Springer-Verlag Berlin Heidelberg 2007.
Start page
840
End page
849
Volume
4881 LNCS
Language
English
OCDE Knowledge area
Matemáticas
Subjects
Scopus EID
2-s2.0-38449122162
ISBN
9783540772255
ISSN of the container
03029743
ISBN of the container
2854287185, 978-285428718-9
DOI of the container
10.1007/978-3-540-77226-2_84
Conference
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Sources of information:
Directorio de Producción Científica
Scopus