Title
Biclusters evaluation based on shifting and scaling patterns
Date Issued
01 January 2007
Access level
open access
Resource Type
conference paper
Author(s)
Nepomuceno J.A.
Lora A.T.
García-Gutiérrez J.
Pablo de Olavide University
Publisher(s)
Springer Verlag
Abstract
Microarray techniques have motivated the develop of different methods to extract useful information from a biological point of view. Biclustering algorithms obtain a set of genes with the same behaviour over a group of experimental conditions from gene expression data. In order to evaluate the quality of a bicluster, it is useful to identify specific tendencies represented by patterns on data. These patterns describe the behaviour of a bicluster obtained previously by an adequate biclustering technique from gene expression data. In this paper a new measure for evaluating biclusters is proposed. This measure captures a special kind of patterns with scaling trends which represents quality patterns. They are not contemplated with the previous evaluating measure accepted in the literature. This work is a first step to investigate methods that search biclusters based on the concept of shift and scale invariance. Experimental results based on the yeast cell cycle and the human B-cell lymphoma datasets are reported. Finally, the performance of the proposed technique is compared with an optimization method based on the Nelder-Mead Simplex search algorithm. © Springer-Verlag Berlin Heidelberg 2007.
Start page
840
End page
849
Volume
4881 LNCS
Language
English
OCDE Knowledge area
Matemáticas
Scopus EID
2-s2.0-38449122162
ISBN
9783540772255
ISSN of the container
03029743
ISBN of the container
2854287185, 978-285428718-9
DOI of the container
10.1007/978-3-540-77226-2_84
Conference
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Sources of information: Directorio de Producción Científica Scopus