Aims: There is extensive documentation of the floristic composition and plant diversity patterns in the South American coastal deserts and the adjoining arid Puna. Surprisingly, the vegetation along the transition zone from these deserts in the coastal lowlands to the Puna highlands has been little studied. The main goal of this study was to characterize and compare the structure of plant communities in two localities in the Ica department, with the aim of contributing to the floristic knowledge of the desertic western Andean slopes along the lowlands to Andean transition zone. Study area: Huancacasa and La Bolivar localities located at approximately 740 and 3,000 m a.s.l. in the Ica department, Peru. Methods: We sampled 10 plots of 100 m × 60 m located between 740–1,600 m a.s.l. in La Bolivar and 15 modified Whittaker plots (MWPs) of 20 m × 5 m located between 2,800–3,000 m a.s.l. in Huancacasa and recorded species richness and abundance. We estimated alpha diversity, performed Non-Metric Multidimensional Scaling (NMDS) and one-way Similarity (ANOSIM) analyses and plotted rank-abundance curves. Results: We recorded 215 species and morphospecies with coastal and Andean distribution, including 43 species (21.3%) that are either considered endemic to Peru or have been considered under some form of threat by Peruvian or international standards. Both plant communities differed in terms of composition, species richness, abundance, and dominant growth form, with higher values in the communities located at higher elevations. We added 83 species as new records for the Ica department. Conclusions: Our research reinforced the need to increase exploration and documentation of the vegetation within the lowland to highland transition zone along the dry western slopes of the Andes. Our results from such a transition in Ica department in southern Peru, show that much of its plant diversity seems to be, as yet, largely unknown.